Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 3 | AO275_01805 | Not Available | Positive | 4001468 - 4004158 | 97613.0 |
| tetr family transcriptional regulator | AO275_01810 | Not Available | Negative | 4004218 - 4004859 | 23975.1 |
| auxin-binding protein | AO275_01815 | Not Available | Negative | 4004943 - 4005446 | 18418.9 |
| marr family transcriptional regulator | AO275_01825 | Not Available | Negative | 4007592 - 4007936 | 12922.8 |
| deoxyribonuclease i | AO275_01830 | Not Available | Positive | 4008049 - 4009026 | 36423.0 |
| amidase | AO275_01835 | Not Available | Positive | 4009082 - 4010788 | 60221.4 |
| multidrug abc transporter atp-binding protein | AO275_01840 | Not Available | Positive | 4011046 - 4012899 | 67680.1 |
| phenylacetic acid degradation protein | AO275_01845 | Not Available | Negative | 4012950 - 4013390 | 15549.8 |
| tetr family transcriptional regulator | AO275_01850 | Not Available | Positive | 4013534 - 4014154 | 23363.7 |
| hypothetical protein | AO275_01855 | Not Available | Positive | 4014356 - 4015747 | 52238.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
