Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | AO275_10710 | Not Available | Negative | 3681766 - 3683232 | 54610.3 |
| transcription termination factor rho | AO275_10715 | Not Available | Negative | 3683362 - 3684621 | 47017.1 |
| thioredoxin | AO275_10720 | Not Available | Negative | 3684853 - 3685182 | 11776.2 |
| gntr family transcriptional regulator | AO275_10725 | Not Available | Negative | 3685304 - 3686008 | 25456.5 |
| amino acid abc transporter substrate-binding protein | AO275_10730 | Not Available | Positive | 3686260 - 3687045 | 27901.8 |
| abc transporter permease | AO275_10735 | Not Available | Positive | 3687076 - 3687741 | 24597.7 |
| amino acid abc transporter permease | AO275_10740 | Not Available | Positive | 3687738 - 3688388 | 23518.3 |
| amino acid abc transporter atp-binding protein | AO275_10745 | Not Available | Positive | 3688375 - 3689109 | 26761.7 |
| exopolyphosphatase | AO275_10750 | Not Available | Positive | 3689285 - 3690787 | 56298.8 |
| polyphosphate kinase | AO275_10755 | Not Available | Negative | 3690774 - 3692984 | 82741.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
