Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit beta | AO275_10460 | Not Available | Negative | 3630076 - 3631230 | 42272.8 |
| (2fe-2s)-binding protein | AO275_10465 | Not Available | Negative | 3631227 - 3632636 | 50132.6 |
| nad(fad)-dependent dehydrogenase | AO275_10470 | Not Available | Negative | 3632615 - 3632926 | 11289.6 |
| abc transporter | AO275_10475 | Not Available | Negative | 3632923 - 3634764 | 66103.2 |
| dna-directed rna polymerase subunit alpha | AO275_10480 | Not Available | Negative | 3634766 - 3635629 | 30630.1 |
| abc transporter permease | AO275_10485 | Not Available | Negative | 3635626 - 3636582 | 33443.0 |
| abc transporter substrate-binding protein | AO275_10490 | Not Available | Negative | 3636614 - 3638251 | 59526.9 |
| fad-dependent oxidoreductase | AO275_10495 | Not Available | Negative | 3638346 - 3639620 | 45933.7 |
| dehalogenase | AO275_10500 | Not Available | Negative | 3639684 - 3640352 | 25133.1 |
| gnat family acetyltransferase | AO275_10505 | Not Available | Positive | 3640911 - 3641768 | 30793.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
