Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urocanate hydratase | AO275_10155 | Not Available | Positive | 3557317 - 3559035 | 62694.3 |
| histidine abc transporter substrate-binding protein | AO275_10160 | Not Available | Positive | 3559148 - 3560116 | 35237.3 |
| abc transporter permease | AO275_10165 | Not Available | Positive | 3560195 - 3561046 | 30788.0 |
| hypothetical protein | AO275_10170 | Not Available | Positive | 3561043 - 3561873 | 30783.5 |
| histidine ammonia-lyase | AO275_10175 | Not Available | Positive | 3561886 - 3563427 | 54738.0 |
| histidine ammonia-lyase | AO275_10180 | Not Available | Positive | 3563522 - 3565069 | 54693.8 |
| proline-specific permease | AO275_10185 | Not Available | Positive | 3565173 - 3566549 | 49238.8 |
| imidazolonepropionase | AO275_10190 | Not Available | Positive | 3566566 - 3567771 | 43116.6 |
| n-formylglutamate deformylase | AO275_10195 | Not Available | Positive | 3567783 - 3568586 | 29892.4 |
| atpase p | AO275_10200 | Not Available | Negative | 3568717 - 3570954 | 78845.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
