Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit delta | AO275_09600 | Not Available | Negative | 3441342 - 3441638 | 11319.2 |
| sarcosine oxidase subunit beta | AO275_09605 | Not Available | Negative | 3441654 - 3442904 | 45298.2 |
| serine hydroxymethyltransferase | AO275_09610 | Not Available | Negative | 3442922 - 3444175 | 44898.4 |
| glutamate-pyruvate aminotransferase | AO275_09615 | Not Available | Negative | 3444574 - 3445791 | 44994.5 |
| conjugal transfer protein trax | AO275_09620 | Not Available | Negative | 3446023 - 3446769 | 27757.3 |
| threonine aldolase | AO275_09625 | Not Available | Positive | 3446868 - 3447908 | 38179.0 |
| ferredoxin | AO275_09630 | Not Available | Negative | 3447931 - 3449031 | 40469.6 |
| rieske (2fe-2s) protein | AO275_09635 | Not Available | Positive | 3449342 - 3450640 | 49068.6 |
| chitinase | AO275_09640 | Not Available | Positive | 3450855 - 3452624 | 65733.8 |
| electron transfer flavoprotein subunit beta | AO275_09645 | Not Available | Negative | 3453265 - 3454071 | 28126.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
