Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent zinc protease | AO275_09545 | Not Available | Negative | 3428004 - 3428507 | 18729.5 |
| acyltransferase | AO275_09550 | Not Available | Positive | 3428700 - 3429593 | 33984.8 |
| hypothetical protein | AO275_09555 | Not Available | Positive | 3429668 - 3430732 | 38822.2 |
| hypothetical protein | AO275_09560 | Not Available | Negative | 3430726 - 3431292 | 18506.1 |
| hypothetical protein | AO275_09565 | Not Available | Positive | 3431529 - 3432560 | 38121.2 |
| hypothetical protein | AO275_09575 | Not Available | Positive | 3434014 - 3435090 | 40249.8 |
| aldehyde dismutase | AO275_09580 | Not Available | Negative | 3435197 - 3436396 | 41950.5 |
| formyltetrahydrofolate deformylase | AO275_09585 | Not Available | Negative | 3436644 - 3437501 | 32009.3 |
| sarcosine oxidase subunit gamma | AO275_09590 | Not Available | Negative | 3437573 - 3438205 | 23053.8 |
| sarcosine oxidase subunit alpha | AO275_09595 | Not Available | Negative | 3438325 - 3441345 | 109603.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
