Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase subunit sigma | AO275_09490 | Not Available | Positive | 3417358 - 3417876 | 19621.7 |
| amino acid abc transporter substrate-binding protein | AO275_09495 | Not Available | Positive | 3417873 - 3418856 | 36113.3 |
| peptidase | AO275_09500 | Not Available | Positive | 3418956 - 3420089 | 41572.7 |
| hypothetical protein | AO275_09505 | Not Available | Positive | 3420086 - 3420265 | 6350.84 |
| glutathione s-transferase | AO275_09510 | Not Available | Positive | 3420379 - 3421008 | 23398.8 |
| hypothetical protein | AO275_09515 | Not Available | Negative | 3421125 - 3422501 | 51015.0 |
| acrr family transcriptional regulator | AO275_09520 | Not Available | Negative | 3422754 - 3423419 | 23983.9 |
| metallophosphoesterase | AO275_09530 | Not Available | Positive | 3424624 - 3425754 | 41011.4 |
| histidine kinase | AO275_09535 | Not Available | Negative | 3425837 - 3427264 | 52992.9 |
| transcriptional regulator | AO275_09540 | Not Available | Negative | 3427264 - 3427944 | 25251.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
