Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroloquinoline quinone biosynthesis protein pqqc | AO275_09340 | Not Available | Positive | 3383537 - 3384292 | 29104.4 |
| pyrroloquinoline quinone biosynthesis protein pqqd | AO275_09345 | Not Available | Positive | 3384331 - 3384603 | 10360.5 |
| pyrroloquinoline quinone biosynthesis protein pqqe | AO275_09350 | Not Available | Positive | 3384596 - 3385765 | 44027.6 |
| peptidase s9 | AO275_09355 | Not Available | Positive | 3385728 - 3387560 | 66519.4 |
| hypothetical protein | AO275_09360 | Not Available | Negative | 3387612 - 3387773 | 5898.73 |
| acyl-coa dehydrogenase | AO275_09365 | Not Available | Negative | 3388153 - 3389931 | 64317.7 |
| diguanylate cyclase | AO275_09370 | Not Available | Negative | 3390100 - 3391398 | 48392.0 |
| acyl-coa dehydrogenase | AO275_09375 | Not Available | Negative | 3391696 - 3393501 | 65536.6 |
| pyrroloquinoline quinone biosynthesis protein pqqe | AO275_09380 | Not Available | Negative | 3393835 - 3394131 | 10390.1 |
| dethiobiotin synthetase | AO275_09385 | Not Available | Negative | 3394282 - 3394965 | 23680.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
