Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chemotaxis protein chey | AO275_09240 | Not Available | Positive | 3358540 - 3359616 | 38066.8 |
| galactose 1-dehydrogenase | AO275_09245 | Not Available | Negative | 3359659 - 3360585 | 33932.6 |
| decarboxylase | AO275_09250 | Not Available | Negative | 3360709 - 3361485 | 27365.8 |
| dipeptidase | AO275_09255 | Not Available | Negative | 3361724 - 3363463 | 62554.6 |
| udp-4-amino-4-deoxy-l-arabinose-oxoglutarate aminotransferase | AO275_09260 | Not Available | Positive | 3364137 - 3365285 | 41869.6 |
| udp phosphate 4-deoxy-4-formamido-l-arabinose transferase | AO275_09265 | Not Available | Positive | 3365282 - 3366295 | 37873.1 |
| udp-4-amino-4-deoxy-l-arabinose formyltransferase | AO275_09270 | Not Available | Positive | 3366292 - 3368283 | 74102.9 |
| 4-deoxy-4-formamido-l-arabinose-phospho-udp deformylase | AO275_09275 | Not Available | Positive | 3368283 - 3369164 | 32634.2 |
| 4-amino-4-deoxy-l-arabinose transferase | AO275_09280 | Not Available | Positive | 3369161 - 3370813 | 61406.7 |
| 4-amino-4-deoxy-l-arabinose-phospho-udp flippase | AO275_09285 | Not Available | Positive | 3370810 - 3371154 | 12689.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
