Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s21 | AO275_09080 | Not Available | Positive | 3324798 - 3325013 | 8386.25 |
| dna primase | AO275_09085 | Not Available | Positive | 3325419 - 3327374 | 72874.4 |
| rna polymerase subunit sigma-70 | AO275_09090 | Not Available | Positive | 3327442 - 3329292 | 69434.9 |
| hypothetical protein | AO275_09095 | Not Available | Positive | 3329365 - 3329712 | 12863.7 |
| diguanylate phosphodiesterase | AO275_09100 | Not Available | Positive | 3329712 - 3332201 | 92212.2 |
| Trna-met | Not Available | Not Available | Positive | 3332217 - 3332293 | Not Available |
| integrase | AO275_09110 | Not Available | Positive | 3332423 - 3333499 | 40263.5 |
| hypothetical protein | AO275_09115 | Not Available | Negative | 3333615 - 3334121 | 20238.6 |
| hypothetical protein | AO275_09120 | Not Available | Negative | 3334165 - 3335340 | 43471.0 |
| hypothetical protein | AO275_09125 | Not Available | Negative | 3335350 - 3336561 | 45661.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
