Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| short-chain dehydrogenase | AO275_08765 | Not Available | Positive | 3265322 - 3266098 | 28417.8 |
| zinc-binding protein | AO275_08770 | Not Available | Positive | 3266192 - 3266530 | 12715.5 |
| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase | AO275_08775 | Not Available | Positive | 3266647 - 3267294 | 23763.5 |
| s-adenosylmethionine decarboxylase proenzyme | AO275_08780 | Not Available | Negative | 3267373 - 3268167 | 30179.7 |
| peroxiredoxin | AO275_08785 | Not Available | Negative | 3268411 - 3268833 | 15246.5 |
| cyclic amp receptor protein | AO275_08790 | Not Available | Positive | 3269045 - 3269689 | 23740.8 |
| lipoate--protein ligase | AO275_08795 | Not Available | Negative | 3269702 - 3270394 | 25101.1 |
| indole-3-glycerol-phosphate synthase | AO275_08800 | Not Available | Negative | 3270427 - 3271263 | 30197.5 |
| anthranilate phosphoribosyltransferase | AO275_08805 | Not Available | Negative | 3271260 - 3272309 | 37193.8 |
| hypothetical protein | AO275_08925 | Not Available | Positive | 3290719 - 3290901 | 6602.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
