Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rpir family transcriptional regulator | AO275_24760 | Not Available | Negative | 3177728 - 3178636 | 33805.2 |
| 5-dehydro-2-deoxygluconokinase | AO275_24765 | Not Available | Positive | 3178903 - 3180840 | 71358.5 |
| myo-inosose-2 dehydratase | AO275_24770 | Not Available | Positive | 3180886 - 3181785 | 32795.9 |
| 5-deoxy-glucuronate isomerase | AO275_24775 | Not Available | Positive | 3181799 - 3182608 | 29869.0 |
| methylmalonate-semialdehyde dehydrogenase | AO275_24780 | Not Available | Positive | 3182636 - 3184138 | 53658.5 |
| xylose isomerase | AO275_24785 | Not Available | Positive | 3184172 - 3184999 | 29823.8 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | AO275_24790 | Not Available | Positive | 3185221 - 3187158 | 70601.1 |
| inositol 2-dehydrogenase | AO275_24795 | Not Available | Positive | 3187216 - 3188226 | 36276.7 |
| oxidoreductase | AO275_24800 | Not Available | Positive | 3188310 - 3189329 | 37125.7 |
| rhizopine-binding protein | AO275_24805 | Not Available | Positive | 3189815 - 3190744 | 33046.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
