Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mechanosensitive ion channel protein mscs | AO275_23960 | Not Available | Positive | 3009779 - 3010903 | 41217.3 |
| acid phosphatase | AO275_23965 | Not Available | Negative | 3010912 - 3012600 | 62151.1 |
| dna polymerase iii subunit gamma/tau | AO275_23970 | Not Available | Positive | 3012823 - 3015015 | 79152.1 |
| nucleoid-associated protein | AO275_23975 | Not Available | Positive | 3015077 - 3015403 | 11695.4 |
| aldehyde dehydrogenase | AO275_23980 | Not Available | Negative | 3015644 - 3017110 | 51129.2 |
| reactive intermediate/imine deaminase | AO275_23985 | Not Available | Negative | 3017372 - 3017764 | 13979.7 |
| alanine racemase | AO275_23990 | Not Available | Negative | 3017754 - 3018890 | 41049.1 |
| lysr family transcriptional regulator | AO275_23995 | Not Available | Positive | 3019001 - 3019885 | 33007.9 |
| recombination protein recr | AO275_24000 | Not Available | Positive | 3020083 - 3020685 | 21508.2 |
| hypothetical protein | AO275_24005 | Not Available | Negative | 3020707 - 3021621 | 35781.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
