Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urea abc transporter permease subunit urtb | AO275_23660 | Not Available | Positive | 2942636 - 2943553 | 33072.3 |
| urea abc transporter permease subunit urtc | AO275_23665 | Not Available | Positive | 2943564 - 2944727 | 42073.7 |
| abc transporter atp-binding protein | AO275_23670 | Not Available | Positive | 2944724 - 2945485 | 28056.0 |
| abc transporter atp-binding protein | AO275_23675 | Not Available | Positive | 2945496 - 2946185 | 25196.7 |
| formamidase | AO275_23680 | Not Available | Positive | 2946267 - 2947496 | 44646.0 |
| fmdb family transcriptional regulator | AO275_23685 | Not Available | Positive | 2947574 - 2947921 | 12347.8 |
| sensory protein tspo | AO275_23690 | Not Available | Positive | 2948096 - 2948536 | 16165.4 |
| glutathione s-transferase | AO275_23695 | Not Available | Negative | 2948588 - 2949214 | 23282.0 |
| chemotaxis protein | AO275_23700 | Not Available | Positive | 2949560 - 2951488 | 68064.0 |
| hypothetical protein | AO275_23705 | Not Available | Negative | 2951585 - 2952526 | 33687.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
