Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease h | AO275_23205 | Not Available | Positive | 2807173 - 2807625 | 16764.9 |
| dna polymerase iii subunit epsilon | AO275_23210 | Not Available | Positive | 2808138 - 2808917 | 28109.1 |
| gnat family acetyltransferase | AO275_23215 | Not Available | Positive | 2808940 - 2809497 | 21043.8 |
| hypothetical protein | AO275_23220 | Not Available | Negative | 2809530 - 2809742 | 7816.29 |
| acp phosphodiesterase | AO275_23225 | Not Available | Positive | 2809955 - 2810515 | 19787.4 |
| hypothetical protein | AO275_23230 | Not Available | Positive | 2810663 - 2815861 | 192865.0 |
| acyl-coa dehydrogenase | AO275_23235 | Not Available | Negative | 2815916 - 2817067 | 41739.1 |
| crotonase | AO275_23240 | Not Available | Negative | 2817071 - 2818168 | 40468.0 |
| mfs transporter | AO275_23245 | Not Available | Positive | 2818457 - 2820136 | 60186.9 |
| disulfide bond formation protein dsba | AO275_23250 | Not Available | Positive | 2820133 - 2821332 | 43131.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
