Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucyl/phenylalanyl-trna--protein transferase | AO275_22580 | Not Available | Positive | 2629745 - 2630434 | 26164.1 |
| arginyl-trna-protein transferase | AO275_22585 | Not Available | Positive | 2630484 - 2631191 | 27846.3 |
| translation initiation factor if-1 | AO275_22590 | Not Available | Positive | 2631293 - 2631511 | 8303.06 |
| atp-dependent clp protease atp-binding subunit clpa | AO275_22595 | Not Available | Negative | 2631624 - 2633897 | 83503.8 |
| atp-dependent clp protease adaptor clps | AO275_22600 | Not Available | Negative | 2633928 - 2634290 | 13545.2 |
| cold-shock protein | AO275_22605 | Not Available | Positive | 2634513 - 2634782 | 9339.04 |
| isocitrate dehydrogenase | AO275_22610 | Not Available | Negative | 2634863 - 2636119 | 45695.0 |
| isocitrate dehydrogenase | AO275_22615 | Not Available | Positive | 2636559 - 2638784 | 80701.1 |
| nudix hydrolase | AO275_22620 | Not Available | Positive | 2638918 - 2639364 | 16899.0 |
| trna 2-thiouridylase | AO275_22625 | Not Available | Positive | 2639425 - 2640555 | 42182.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
