Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secretin | AO275_22430 | Not Available | Negative | 2600535 - 2602550 | 73371.1 |
| hrpg protein | AO275_22435 | Not Available | Negative | 2602543 - 2602953 | 14955.1 |
| serine kinase | AO275_22440 | Not Available | Negative | 2602940 - 2603161 | 8202.46 |
| hypothetical protein | AO275_22445 | Not Available | Negative | 2603232 - 2603810 | 21506.3 |
| hypothetical protein | AO275_22450 | Not Available | Negative | 2603776 - 2604399 | 23432.0 |
| type iii secretion protein | AO275_22455 | Not Available | Negative | 2604396 - 2605187 | 29042.5 |
| type iii secretion protein | AO275_22460 | Not Available | Negative | 2605197 - 2605556 | 12900.0 |
| dna-binding protein | AO275_22465 | Not Available | Negative | 2605591 - 2606535 | 32521.4 |
| atp-dependent helicase hrpa | AO275_22470 | Not Available | Negative | 2606605 - 2606811 | 6884.1 |
| aaa family atpase | AO275_22475 | Not Available | Negative | 2606927 - 2607865 | 35181.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
