Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ketoglutarate semialdehyde dehydrogenase | AO275_22330 | Not Available | Positive | 2577385 - 2578968 | 55670.9 |
| acetyltransferase | AO275_22335 | Not Available | Negative | 2579087 - 2579668 | 21367.7 |
| rna polymerase subunit sigma | AO275_22340 | Not Available | Negative | 2579668 - 2580222 | 20861.0 |
| type iii secretion protein | AO275_22345 | Not Available | Positive | 2580484 - 2581593 | 41088.8 |
| type iii secretion protein hrpi | AO275_22350 | Not Available | Positive | 2581590 - 2583680 | 77346.6 |
| type iii secretion protein hrpq | AO275_22355 | Not Available | Positive | 2583691 - 2584620 | 34437.1 |
| atp synthase | AO275_22360 | Not Available | Positive | 2584620 - 2585975 | 48609.4 |
| type iii secretion protein | AO275_22365 | Not Available | Positive | 2585962 - 2586426 | 18161.2 |
| hypothetical protein | AO275_22370 | Not Available | Positive | 2586423 - 2586983 | 20843.5 |
| hypothetical protein | AO275_22375 | Not Available | Positive | 2586985 - 2588049 | 38628.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
