Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna ligase-associated dexh box helicase | AO275_16220 | Not Available | Positive | 141210 - 143699 | 92217.0 |
| dead/deah box helicase | AO275_16225 | Not Available | Positive | 143696 - 144352 | 24258.2 |
| hypothetical protein | AO275_16230 | Not Available | Negative | 144417 - 144629 | 7364.65 |
| deoxycytidine triphosphate deaminase | AO275_16235 | Not Available | Negative | 144742 - 145308 | 21295.4 |
| cold-shock protein | AO275_16240 | Not Available | Positive | 145628 - 145837 | 7727.11 |
| atp-binding protein | AO275_16245 | Not Available | Negative | 145971 - 147065 | 38639.8 |
| methionine--trna ligase | AO275_16250 | Not Available | Positive | 147241 - 149283 | 75351.8 |
| (4fe-4s)-binding protein | AO275_16255 | Not Available | Positive | 149397 - 150437 | 36877.4 |
| endonuclease iii | AO275_16260 | Not Available | Positive | 150543 - 151181 | 23915.0 |
| leucyl-trna synthetase | AO275_16265 | Not Available | Positive | 151287 - 151469 | 6895.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
