Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nickel abc transporter substrate-binding protein | AO275_21920 | Not Available | Positive | 2486409 - 2487137 | 26143.4 |
| hypothetical protein | AO275_21925 | Not Available | Negative | 2487389 - 2488555 | 43990.9 |
| carbonate dehydratase | AO275_21930 | Not Available | Negative | 2488648 - 2489208 | 19968.7 |
| gtp cyclohydrolase | AO275_21935 | Not Available | Negative | 2489220 - 2490125 | 32962.2 |
| lysr family transcriptional regulator | AO275_21940 | Not Available | Negative | 2490305 - 2491213 | 33342.3 |
| abc transporter substrate-binding protein | AO275_21945 | Not Available | Positive | 2491415 - 2492935 | 56414.8 |
| abc transporter permease | AO275_21950 | Not Available | Positive | 2493004 - 2493921 | 33157.4 |
| peptide abc transporter permease | AO275_21955 | Not Available | Positive | 2493930 - 2494838 | 32333.6 |
| peptide abc transporter substrate-binding protein | AO275_21960 | Not Available | Positive | 2494855 - 2495856 | 36504.7 |
| abc transporter atp-binding protein | AO275_21965 | Not Available | Positive | 2495853 - 2496863 | 36888.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
