Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein impk | AO275_00520 | Not Available | Negative | 2048889 - 2049602 | 26700.2 |
| type vi secretion protein | AO275_00525 | Not Available | Negative | 2049599 - 2050942 | 50485.6 |
| hypothetical protein | AO275_00530 | Not Available | Negative | 2050939 - 2051688 | 27069.9 |
| clpv1 family t6ss atpase | AO275_00535 | Not Available | Negative | 2051782 - 2054376 | 95135.0 |
| type vi secretion system protein | AO275_00540 | Not Available | Negative | 2054373 - 2055443 | 40934.2 |
| type vi secretion system protein | AO275_00545 | Not Available | Negative | 2055407 - 2057239 | 69640.7 |
| type vi secretion protein | AO275_00550 | Not Available | Negative | 2057239 - 2057721 | 18172.9 |
| evpb family type vi secretion protein | AO275_00555 | Not Available | Negative | 2057747 - 2059249 | 55961.1 |
| type vi secretion protein | AO275_00560 | Not Available | Negative | 2059264 - 2059797 | 20108.3 |
| hypothetical protein | AO275_00565 | Not Available | Negative | 2059867 - 2060616 | 28500.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
