Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase-associated protein rapa | AO275_16015 | Not Available | Positive | 95726 - 98572 | 106506.0 |
| mfs transporter | AO275_16020 | Not Available | Negative | 98660 - 100030 | 49438.6 |
| diguanylate phosphodiesterase | AO275_16025 | Not Available | Positive | 100262 - 102577 | 85420.7 |
| hypothetical protein | AO275_16030 | Not Available | Negative | 102686 - 102991 | 11063.3 |
| leucine abc transporter substrate-binding protein | AO275_16035 | Not Available | Positive | 103320 - 104444 | 39612.0 |
| branched-chain amino acid transporter permease subunit livh | AO275_16040 | Not Available | Positive | 104657 - 105580 | 32157.4 |
| leucine/isoleucine/valine transporter permease subunit | AO275_16045 | Not Available | Positive | 105577 - 106842 | 46071.9 |
| abc transporter atp-binding protein | AO275_16050 | Not Available | Positive | 106839 - 107606 | 28246.5 |
| abc transporter atp-binding protein | AO275_16055 | Not Available | Positive | 107607 - 108308 | 25698.4 |
| hypothetical protein | AO275_16060 | Not Available | Negative | 108368 - 108613 | 9028.76 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
