Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | AO275_03380 | Not Available | Negative | 1981927 - 1982598 | 25797.7 |
| 4-hydroxyphenylpyruvate dioxygenase | AO275_03385 | Not Available | Negative | 1982709 - 1984616 | 70050.8 |
| hypothetical protein | AO275_03390 | Not Available | Positive | 1985211 - 1986539 | 48543.2 |
| hypothetical protein | AO275_03395 | Not Available | Negative | 1986767 - 1987654 | 31847.1 |
| porin | AO275_03400 | Not Available | Positive | 1987877 - 1989133 | 46079.9 |
| 4-carboxymuconolactone decarboxylase | AO275_03405 | Not Available | Negative | 1989200 - 1989598 | 15066.0 |
| 3-carboxy-cis,cis-muconate cycloisomerase | AO275_03410 | Not Available | Negative | 1989595 - 1990956 | 48896.8 |
| 4-hydroxybenzoate transporter | AO275_03415 | Not Available | Negative | 1990982 - 1992331 | 47309.9 |
| protocatechuate 3,4-dioxygenase | AO275_03420 | Not Available | Negative | 1992399 - 1993001 | 22375.2 |
| protocatechuate 3,4-dioxygenase | AO275_03425 | Not Available | Negative | 1993012 - 1993731 | 26727.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
