Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integration host factor subunit alpha | AO275_03180 | Not Available | Negative | 1947571 - 1947873 | 11476.8 |
| phenylalanine--trna ligase subunit beta | AO275_03185 | Not Available | Negative | 1947877 - 1950255 | 86481.9 |
| phenylalanine--trna ligase subunit alpha | AO275_03190 | Not Available | Negative | 1950288 - 1951304 | 38184.9 |
| 50s ribosomal protein l20 | AO275_03195 | Not Available | Negative | 1951409 - 1951765 | 13314.6 |
| 50s ribosomal protein l35 | AO275_03200 | Not Available | Negative | 1951795 - 1951989 | 7368.38 |
| translation initiation factor if-3 | AO275_03205 | Not Available | Negative | 1952050 - 1952583 | 20066.6 |
| threonine--trna ligase | AO275_03210 | Not Available | Negative | 1952601 - 1954523 | 72580.6 |
| hypothetical protein | AO275_03215 | Not Available | Positive | 1954868 - 1955176 | 10660.8 |
| cold-shock protein | AO275_03220 | Not Available | Positive | 1955470 - 1955682 | 7657.0 |
| hypothetical protein | AO275_03225 | Not Available | Negative | 1955748 - 1956083 | 11660.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
