Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminodeoxychorismate synthase component i | AO275_02995 | Not Available | Negative | 1816003 - 1817349 | 49517.8 |
| alpha-l-glutamate ligase | AO275_03000 | Not Available | Negative | 1817446 - 1818426 | 35983.5 |
| hypothetical protein | AO275_03005 | Not Available | Negative | 1818423 - 1819961 | 57059.3 |
| atp-dependent zinc protease | AO275_03010 | Not Available | Negative | 1819966 - 1820502 | 19871.9 |
| gntr family transcriptional regulator | AO275_03015 | Not Available | Positive | 1820797 - 1821504 | 26655.7 |
| 2-methylisocitrate lyase | AO275_03020 | Not Available | Positive | 1821501 - 1822394 | 32077.5 |
| 2-methylcitrate synthase | AO275_03025 | Not Available | Positive | 1822511 - 1823638 | 41955.3 |
| fe/s-dependent 2-methylisocitrate dehydratase acnd | AO275_03030 | Not Available | Positive | 1823726 - 1826314 | 94031.4 |
| 3-methylitaconate isomerase | AO275_03035 | Not Available | Positive | 1826481 - 1827671 | 41339.5 |
| transcriptional regulator | AO275_03040 | Not Available | Negative | 1827885 - 1828703 | 31016.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
