Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AO275_05575 | Not Available | Negative | 1711043 - 1711579 | 20304.4 |
| acetyltransferase | AO275_05580 | Not Available | Positive | 1711706 - 1712269 | 21444.7 |
| hypothetical protein | AO275_05585 | Not Available | Negative | 1712388 - 1713113 | 25666.6 |
| hypothetical protein | AO275_05595 | Not Available | Positive | 1714428 - 1715072 | 24163.1 |
| hypothetical protein | AO275_05600 | Not Available | Positive | 1715077 - 1715379 | 11520.5 |
| hcp1 family type vi secretion system effector | AO275_05605 | Not Available | Negative | 1715443 - 1715937 | 17893.2 |
| Trna-thr | Not Available | Not Available | Positive | 1717572 - 1717647 | Not Available |
| molecular chaperone dnaj | AO275_05615 | Not Available | Positive | 1718469 - 1719482 | 36643.4 |
| hypothetical protein | AO275_05620 | Not Available | Positive | 1719929 - 1720255 | 11821.0 |
| sam-dependent methyltransferase | AO275_05625 | Not Available | Negative | 1720555 - 1721769 | 45881.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
