Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase recq | AO275_05475 | Not Available | Positive | 1686026 - 1687960 | 72706.9 |
| hypothetical protein | AO275_05480 | Not Available | Negative | 1688075 - 1688536 | 14783.3 |
| cbbbc protein | AO275_05485 | Not Available | Negative | 1688733 - 1691069 | 85890.9 |
| formate dehydrogenase family accessory protein fdhd | AO275_05490 | Not Available | Negative | 1691066 - 1691902 | 29737.8 |
| lysr family transcriptional regulator | AO275_05495 | Not Available | Negative | 1692006 - 1692887 | 32625.5 |
| peptidoglycan-binding protein lysm | AO275_05500 | Not Available | Positive | 1693039 - 1693491 | 16244.3 |
| haloacid dehalogenase | AO275_05505 | Not Available | Negative | 1693716 - 1694378 | 25331.4 |
| adp-ribose diphosphatase | AO275_05510 | Not Available | Positive | 1694478 - 1695044 | 20960.2 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | AO275_05515 | Not Available | Positive | 1695041 - 1695916 | 31279.2 |
| thioesterase | AO275_05520 | Not Available | Negative | 1696018 - 1696503 | 18100.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
