Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 1603225 - 1603300 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 1603353 - 1603428 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 1603474 - 1603549 | Not Available |
| 4-hydroxybenzoyl-coa thioesterase | AO275_14080 | Not Available | Positive | 1603725 - 1604186 | 17583.9 |
| pp_01405 | AO275_14085 | Not Available | Positive | 1604216 - 1605196 | Not Available |
| heat-shock protein | AO275_14090 | Not Available | Positive | 1605298 - 1605741 | 16629.5 |
| diguanylate cyclase | AO275_14095 | Not Available | Negative | 1605785 - 1607983 | 81849.9 |
| lysr family transcriptional regulator | AO275_14100 | Not Available | Negative | 1608076 - 1608933 | 31520.3 |
| isopropylmalate isomerase | AO275_14105 | Not Available | Positive | 1609078 - 1610502 | 50948.0 |
| 3-isopropylmalate dehydratase | AO275_14110 | Not Available | Positive | 1610513 - 1611154 | 24167.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
