Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antitermination protein nusb | AO275_15120 | Not Available | Negative | 1502801 - 1503298 | 18619.1 |
| 6,7-dimethyl-8-ribityllumazine synthase | AO275_15125 | Not Available | Negative | 1503295 - 1503771 | 16521.1 |
| 3,4-dihydroxy-2-butanone 4-phosphate synthase | AO275_15130 | Not Available | Negative | 1503901 - 1504992 | 39524.9 |
| riboflavin synthase subunit alpha | AO275_15135 | Not Available | Negative | 1505014 - 1505676 | 23535.1 |
| diaminohydroxyphosphoribosylaminopyrimidine deaminase | AO275_15140 | Not Available | Negative | 1505724 - 1506860 | 40115.7 |
| nrdr family transcriptional regulator | AO275_15145 | Not Available | Negative | 1506866 - 1507330 | 17801.5 |
| hypothetical protein | AO275_15150 | Not Available | Positive | 1507511 - 1507960 | 16010.7 |
| methyltransferase | AO275_15155 | Not Available | Positive | 1507957 - 1508613 | 24319.1 |
| thioredoxin | AO275_15160 | Not Available | Positive | 1508696 - 1509568 | 32138.4 |
| hypothetical protein | AO275_15165 | Not Available | Negative | 1509626 - 1509979 | 12506.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
