Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | AO275_15070 | Not Available | Negative | 1491584 - 1492393 | 29629.4 |
| autotransporter | AO275_15075 | Not Available | Negative | 1492447 - 1494687 | 78009.6 |
| s-transferase | AO275_15080 | Not Available | Positive | 1495081 - 1495923 | 31312.0 |
| cystathionine beta-lyase | AO275_15085 | Not Available | Positive | 1496041 - 1497207 | 42108.4 |
| exodeoxyribonuclease vii small subunit | AO275_15090 | Not Available | Positive | 1497334 - 1497579 | 9036.5 |
| geranyl transferase | AO275_15095 | Not Available | Positive | 1497576 - 1498463 | 31472.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | AO275_15100 | Not Available | Positive | 1498620 - 1500515 | 68138.1 |
| mfs transporter | AO275_15105 | Not Available | Negative | 1500635 - 1501054 | 15360.5 |
| gtp cyclohydrolase | AO275_15110 | Not Available | Negative | 1501051 - 1501668 | 22145.9 |
| thiamine monophosphate kinase | AO275_15115 | Not Available | Negative | 1501819 - 1502784 | 32976.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
