Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase | AO275_14915 | Not Available | Negative | 1463003 - 1464163 | 42363.0 |
| hypothetical protein | AO275_14920 | Not Available | Positive | 1464183 - 1464398 | 7658.18 |
| hypothetical protein | AO275_14925 | Not Available | Negative | 1464405 - 1465430 | 36744.8 |
| lytic transglycosylase | AO275_14930 | Not Available | Negative | 1465430 - 1466437 | 37466.5 |
| rod shape-determining protein roda | AO275_14935 | Not Available | Negative | 1466455 - 1467558 | 40161.8 |
| penicillin-binding protein 2 | AO275_14940 | Not Available | Negative | 1467590 - 1469485 | 70203.3 |
| 50s rrna methyltransferase | AO275_14945 | Not Available | Negative | 1469514 - 1469981 | 17728.7 |
| ribosome silencing factor | AO275_14950 | Not Available | Negative | 1469991 - 1470377 | 13831.4 |
| nicotinate-nucleotide adenylyltransferase | AO275_14955 | Not Available | Negative | 1470439 - 1471107 | 24512.5 |
| gamma-glutamyl phosphate reductase | AO275_14960 | Not Available | Negative | 1471121 - 1472386 | 44857.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
