Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hopj type iii effector protein | AO275_13385 | Not Available | Positive | 1233842 - 1234183 | 12238.3 |
| thioredoxin reductase | AO275_13390 | Not Available | Negative | 1234246 - 1235208 | 33860.2 |
| alkyl hydroperoxide reductase | AO275_13395 | Not Available | Negative | 1235350 - 1235949 | 21735.9 |
| cysteine biosynthesis protein cysz | AO275_13400 | Not Available | Positive | 1236238 - 1236999 | 28331.7 |
| hypothetical protein | AO275_13405 | Not Available | Positive | 1237170 - 1237520 | 13248.5 |
| hypothetical protein | AO275_13410 | Not Available | Positive | 1238130 - 1238678 | 20569.6 |
| glycoside hydrolase | AO275_13415 | Not Available | Positive | 1238852 - 1240072 | 45253.3 |
| 1,2-oxophytodienoate reductase | AO275_13420 | Not Available | Negative | 1240041 - 1241144 | 40230.9 |
| glutathione peroxidase | AO275_13425 | Not Available | Negative | 1241322 - 1241810 | 17825.5 |
| peptidylprolyl isomerase | AO275_13430 | Not Available | Negative | 1241942 - 1242427 | 17002.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
