Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase subunit sigma | AO275_13235 | Not Available | Positive | 1204488 - 1204991 | 18650.5 |
| hypothetical protein | AO275_13240 | Not Available | Positive | 1204988 - 1205965 | 35459.5 |
| transporter | AO275_13245 | Not Available | Positive | 1206145 - 1208493 | 85237.9 |
| ribosomal subunit interface protein | AO275_13250 | Not Available | Positive | 1208876 - 1209304 | 16060.6 |
| hypothetical protein | AO275_13255 | Not Available | Negative | 1209792 - 1210055 | 9101.83 |
| hypothetical protein | AO275_13260 | Not Available | Positive | 1210072 - 1210404 | 12145.6 |
| hypothetical protein | AO275_13265 | Not Available | Negative | 1210484 - 1210840 | 13876.1 |
| hypothetical protein | AO275_13270 | Not Available | Negative | 1211409 - 1212248 | 30150.0 |
| hcp1 family type vi secretion system effector | AO275_13275 | Not Available | Negative | 1212259 - 1212753 | 17729.9 |
| hypothetical protein | AO275_13280 | Not Available | Positive | 1213161 - 1213490 | 12780.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
