Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| poly(beta-d-mannuronate) c5 epimerase | AO275_13130 | Not Available | Positive | 1180612 - 1182222 | 59490.2 |
| alginate o-acetyltransferase | AO275_13135 | Not Available | Positive | 1182237 - 1183676 | 53537.1 |
| poly(beta-d-mannuronate) lyase | AO275_13140 | Not Available | Positive | 1183685 - 1184818 | 42509.6 |
| poly(beta-d-mannuronate) o-acetylase | AO275_13145 | Not Available | Positive | 1184949 - 1186505 | 58474.3 |
| alginate o-acetyltransferase | AO275_13150 | Not Available | Positive | 1186516 - 1187691 | 43305.1 |
| alginate o-acetyltransferase | AO275_13155 | Not Available | Positive | 1187704 - 1188372 | 23453.0 |
| mannose-1-phosphate guanylyltransferase | AO275_13160 | Not Available | Positive | 1188489 - 1189940 | 53401.9 |
| multidrug transporter | AO275_13170 | Not Available | Positive | 1191714 - 1192178 | 17234.9 |
| short-chain dehydrogenase | AO275_13175 | Not Available | Positive | 1192196 - 1193014 | 28680.6 |
| hypothetical protein | AO275_13180 | Not Available | Negative | 1193032 - 1193886 | 31792.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
