Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit chi | AO275_12980 | Not Available | Positive | 1148677 - 1149105 | 16282.2 |
| dna polymerase iii subunit chi | AO275_12985 | Not Available | Positive | 1149113 - 1149559 | 16429.3 |
| hypothetical protein | AO275_12990 | Not Available | Negative | 1149606 - 1150703 | 40805.1 |
| valine--trna ligase | AO275_12995 | Not Available | Positive | 1150885 - 1153731 | 107032.0 |
| 23s rrna methyltransferase | AO275_13000 | Not Available | Positive | 1153839 - 1154849 | 37167.6 |
| dipicolinate synthase | AO275_13005 | Not Available | Negative | 1155069 - 1155350 | 9759.89 |
| nucleoid-associated protein | AO275_13010 | Not Available | Positive | 1155745 - 1156746 | 37535.2 |
| glutaredoxin | AO275_13015 | Not Available | Positive | 1156752 - 1157102 | 13102.0 |
| glutathione s-transferase | AO275_13020 | Not Available | Negative | 1157196 - 1158128 | 33949.5 |
| giy-yig nuclease | AO275_13025 | Not Available | Negative | 1158193 - 1158546 | 12814.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
