Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite oxidase | AO275_26170 | Not Available | Positive | 1130514 - 1131134 | 23326.0 |
| transporter | AO275_12935 | Not Available | Positive | 1137009 - 1138526 | 55615.3 |
| glycine cleavage system protein h | AO275_12940 | Not Available | Positive | 1138942 - 1139325 | 13817.1 |
| glycine dehydrogenase | AO275_12945 | Not Available | Positive | 1139336 - 1142200 | 103798.0 |
| glycine cleavage system protein t | AO275_12950 | Not Available | Positive | 1142276 - 1143400 | 40251.9 |
| cold-shock protein | AO275_12955 | Not Available | Positive | 1143795 - 1144007 | 7695.06 |
| hypothetical protein | AO275_12960 | Not Available | Positive | 1144092 - 1144577 | 18182.5 |
| lps export abc transporter permease lptg | AO275_12965 | Not Available | Negative | 1144635 - 1145696 | 38722.5 |
| lps export abc transporter permease lptf | AO275_12970 | Not Available | Negative | 1145689 - 1146810 | 41505.5 |
| aminopeptidase | AO275_12975 | Not Available | Positive | 1147129 - 1148619 | 52210.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
