Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | ICMP 8820 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187376 bp
Thymine Count
1184864 bp
Guanine Count
1716189 bp
Cytosine Count
1721239 bp
Genome Length
5809703 bp
Protein-coding Genes
5002 genes
Non-Coding Genes
137 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription elongation factor nusa | AO275_25970 | Not Available | Positive | 1083819 - 1085300 | 54396.7 |
| translation initiation factor if-2 | AO275_25975 | Not Available | Positive | 1085328 - 1087859 | 90959.0 |
| ribosome-binding factor a | AO275_25980 | Not Available | Positive | 1088019 - 1088435 | 15410.5 |
| pseudouridine synthase | AO275_25985 | Not Available | Positive | 1088439 - 1089356 | 33513.1 |
| 30s ribosomal protein s15 | AO275_25990 | Not Available | Positive | 1089516 - 1089785 | 10001.2 |
| polyribonucleotide nucleotidyltransferase | AO275_25995 | Not Available | Positive | 1089961 - 1092066 | 74977.5 |
| phospholipid-binding protein | AO275_26000 | Not Available | Positive | 1092354 - 1092707 | 12159.7 |
| hypothetical protein | AO275_26005 | Not Available | Negative | 1092845 - 1093123 | 10237.0 |
| hypothetical protein | AO275_26010 | Not Available | Negative | 1093174 - 1096152 | 109496.0 |
| sam-dependent methyltransferase | AO275_26015 | Not Available | Negative | 1096261 - 1097277 | 37703.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
