Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| escd/yscd/hrpq family type iii secretion system inner membrane ring protein | PviCFBP13515_04655 | Not Available | Positive | 985257 - 986237 | 35502.2 |
| escn/yscn/hrcn family type iii secretion system atpase | PviCFBP13515_04660 | Not Available | Positive | 986234 - 987583 | 48331.5 |
| type iii secretion protein | PviCFBP13515_04665 | Not Available | Positive | 987587 - 988033 | 17169.3 |
| type iii secretion protein | PviCFBP13515_04670 | Not Available | Positive | 988040 - 988633 | 21451.4 |
| type iii secretion system protein | PviCFBP13515_04675 | Not Available | Positive | 988630 - 989346 | 25848.7 |
| type iii secretion system protein | PviCFBP13515_04680 | Not Available | Positive | 989336 - 989728 | 14117.1 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | PviCFBP13515_04685 | Not Available | Positive | 989725 - 990378 | 24161.5 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | PviCFBP13515_04690 | Not Available | Positive | 990386 - 990652 | 9394.05 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | PviCFBP13515_04695 | Not Available | Positive | 990653 - 991447 | 28624.3 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | PviCFBP13515_04700 | Not Available | Positive | 991444 - 992523 | 39995.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
