Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PviCFBP13515_04605 | Not Available | Positive | 973778 - 974836 | 39598.0 |
| ethanolamine utilization protein | PviCFBP13515_04610 | Not Available | Negative | 975210 - 975629 | 14763.2 |
| hypothetical protein | PviCFBP13515_04615 | Not Available | Positive | 976149 - 976454 | 11240.3 |
| hypothetical protein | PviCFBP13515_04620 | Not Available | Positive | 976649 - 976972 | 11720.9 |
| type iii effector | PviCFBP13515_04625 | Not Available | Negative | 977176 - 978324 | 41771.5 |
| type iii chaperone protein shca | PviCFBP13515_04630 | Not Available | Negative | 978338 - 978718 | 14017.1 |
| type iii effector hrpk | PviCFBP13515_04635 | Not Available | Negative | 978856 - 981135 | 79404.7 |
| rna polymerase sigma factor | PviCFBP13515_04640 | Not Available | Negative | 981222 - 981776 | 21116.3 |
| tyea family type iii secretion system gatekeeper subunit | PviCFBP13515_04645 | Not Available | Positive | 982021 - 983124 | 41007.7 |
| escv/yscv/hrcv family type iii secretion system export apparatus protein | PviCFBP13515_04650 | Not Available | Positive | 983124 - 985223 | 76564.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
