Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(37)-n1)-methyltransferase trmd | PviCFBP13515_04290 | Not Available | Negative | 911008 - 911760 | 28035.2 |
| ribosome maturation factor rimm | PviCFBP13515_04295 | Not Available | Negative | 911766 - 912305 | 20066.0 |
| 30s ribosomal protein s16 | PviCFBP13515_04300 | Not Available | Negative | 912311 - 912568 | 9550.39 |
| signal recognition particle protein | PviCFBP13515_04305 | Not Available | Negative | 912816 - 914192 | 49376.8 |
| inner membrane protein ypjd | PviCFBP13515_04310 | Not Available | Positive | 914406 - 915218 | 29692.4 |
| duf21 domain-containing protein | PviCFBP13515_04315 | Not Available | Positive | 915231 - 916475 | 46353.3 |
| mfs transporter | PviCFBP13515_04320 | Not Available | Positive | 916776 - 918095 | 46675.8 |
| formate-dependent phosphoribosylglycinamide formyltransferase | PviCFBP13515_04325 | Not Available | Negative | 918138 - 919319 | 42224.7 |
| preq0 transporter | PviCFBP13515_04330 | Not Available | Negative | 919423 - 919890 | 16997.2 |
| duf1289 domain-containing protein | PviCFBP13515_04335 | Not Available | Negative | 920029 - 920247 | 7967.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
