Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:other | Not Available | Not Available | Positive | 45117 - 45295 | Not Available |
| hypothetical protein | PviCFBP13515_00245 | Not Available | Negative | 44935 - 46278 | 49942.6 |
| phage antirepressor protein | PviCFBP13515_00250 | Not Available | Negative | 46498 - 47028 | 20716.1 |
| very short patch repair endonuclease | PviCFBP13515_00255 | Not Available | Negative | 47366 - 47806 | 16921.7 |
| restriction endonuclease | PviCFBP13515_00260 | Not Available | Negative | 47814 - 48995 | 44597.2 |
| dna cytosine methyltransferase | PviCFBP13515_00265 | Not Available | Positive | 49076 - 50050 | 36381.0 |
| response regulator | PviCFBP13515_00270 | Not Available | Negative | 50086 - 51141 | 39145.0 |
| histidine kinase | PviCFBP13515_00275 | Not Available | Negative | 51134 - 53326 | 81205.4 |
| ribonucleotide-diphosphate reductase subunit beta | PviCFBP13515_00280 | Not Available | Negative | 53558 - 54805 | 47201.2 |
| cell filamentation protein fic | PviCFBP13515_00285 | Not Available | Negative | 55439 - 56044 | 22925.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
