Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| geranyl transferase | PviCFBP13515_03690 | Not Available | Positive | 795030 - 795917 | 31404.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | PviCFBP13515_03695 | Not Available | Positive | 796075 - 797970 | 68195.3 |
| mfs transporter | PviCFBP13515_03700 | Not Available | Negative | 798177 - 798596 | 15285.4 |
| gtp cyclohydrolase ii | PviCFBP13515_03705 | Not Available | Negative | 798593 - 799210 | 22072.8 |
| thiamine-phosphate kinase | PviCFBP13515_03710 | Not Available | Negative | 799361 - 800326 | 33110.8 |
| n utilization substance protein b | PviCFBP13515_03715 | Not Available | Negative | 800343 - 800840 | 18637.1 |
| 6,7-dimethyl-8-ribityllumazine synthase | PviCFBP13515_03720 | Not Available | Negative | 800837 - 801313 | 16521.1 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | PviCFBP13515_03725 | Not Available | Negative | 801443 - 802534 | 39524.9 |
| riboflavin synthase | PviCFBP13515_03730 | Not Available | Negative | 802556 - 803218 | 23551.1 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | PviCFBP13515_03735 | Not Available | Negative | 803266 - 804411 | 40431.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
