Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PviCFBP13515_03230 | Not Available | Negative | 710921 - 711238 | 11033.4 |
| choline abc transporter substrate-binding protein | PviCFBP13515_03235 | Not Available | Negative | 711396 - 712322 | 33402.2 |
| choline-sulfatase | PviCFBP13515_03240 | Not Available | Negative | 712361 - 713866 | 57036.0 |
| lysr family transcriptional regulator | PviCFBP13515_03245 | Not Available | Positive | 713981 - 714931 | 35293.3 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | PviCFBP13515_03250 | Not Available | Positive | 715221 - 716045 | 30088.4 |
| hypothetical protein | PviCFBP13515_03255 | Not Available | Negative | 716213 - 716686 | 17024.3 |
| tryptophan synthase subunit alpha | PviCFBP13515_03260 | Not Available | Negative | 716810 - 717628 | 28679.3 |
| tryptophan synthase subunit beta | PviCFBP13515_03265 | Not Available | Negative | 717625 - 718854 | 44557.5 |
| lysr family transcriptional regulator | PviCFBP13515_03270 | Not Available | Positive | 718934 - 719890 | 34901.7 |
| duf883 domain-containing protein | PviCFBP13515_03275 | Not Available | Negative | 719891 - 720217 | 11695.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
