Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytosine(967)-c(5))-methyltransferase | PviCFBP13515_03180 | Not Available | Negative | 699955 - 701265 | 47465.3 |
| methionyl-trna formyltransferase | PviCFBP13515_03185 | Not Available | Negative | 701262 - 702206 | 33465.6 |
| peptide deformylase | PviCFBP13515_03190 | Not Available | Negative | 702270 - 702776 | 19197.2 |
| peptidoglycan-binding protein | PviCFBP13515_03195 | Not Available | Positive | 702900 - 703925 | 37536.9 |
| dna-protecting protein dpra | PviCFBP13515_03200 | Not Available | Positive | 704049 - 705161 | 38746.5 |
| sua5/ycio/yrdc/ywlc family protein | PviCFBP13515_03205 | Not Available | Positive | 705199 - 705756 | 20576.8 |
| quinone oxidoreductase | PviCFBP13515_03210 | Not Available | Negative | 705781 - 706758 | 34435.3 |
| oxygen-dependent coproporphyrinogen oxidase | PviCFBP13515_03215 | Not Available | Positive | 706927 - 707841 | 34618.4 |
| shikimate dehydrogenase | PviCFBP13515_03220 | Not Available | Positive | 708083 - 708904 | 29356.9 |
| sulp family inorganic anion transporter | PviCFBP13515_03225 | Not Available | Negative | 708935 - 710503 | 56409.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
