Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase subunit sigma | PviCFBP13515_02165 | Not Available | Positive | 457226 - 458182 | 34547.2 |
| degq family serine endoprotease | PviCFBP13515_02170 | Not Available | Positive | 458468 - 459901 | 50211.6 |
| elongation factor 4 | PviCFBP13515_02175 | Not Available | Positive | 460073 - 461869 | 66311.3 |
| signal peptidase i | PviCFBP13515_02180 | Not Available | Positive | 461879 - 462733 | 32118.1 |
| duf4845 domain-containing protein | PviCFBP13515_02185 | Not Available | Positive | 462825 - 463202 | 14189.3 |
| ribonuclease 3 | PviCFBP13515_02190 | Not Available | Positive | 463199 - 463888 | 25520.6 |
| gtpase era | PviCFBP13515_02195 | Not Available | Positive | 463881 - 464783 | 33864.9 |
| dna repair protein reco | PviCFBP13515_02200 | Not Available | Positive | 464841 - 465524 | 24910.3 |
| pyridoxine 5'-phosphate synthase | PviCFBP13515_02205 | Not Available | Positive | 465576 - 466316 | 26612.1 |
| hypothetical protein | PviCFBP13515_02210 | Not Available | Negative | 466264 - 466527 | 10050.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
