Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | PviCFBP13515_02115 | Not Available | Negative | 447693 - 448670 | 35161.5 |
| dna-binding response regulator | PviCFBP13515_02120 | Not Available | Positive | 449162 - 449833 | 24614.8 |
| sensor histidine kinase | PviCFBP13515_02125 | Not Available | Positive | 449826 - 451217 | 50890.2 |
| hdod domain-containing protein | PviCFBP13515_02130 | Not Available | Negative | 451211 - 452032 | 30439.9 |
| folate-binding protein ygfz | PviCFBP13515_02135 | Not Available | Negative | 452141 - 453088 | 34271.9 |
| succinate dehydrogenase assembly factor 2 family protein | PviCFBP13515_02140 | Not Available | Positive | 453232 - 453486 | 10354.6 |
| hypothetical protein | PviCFBP13515_02145 | Not Available | Positive | 453470 - 453934 | 17375.3 |
| l-aspartate oxidase | PviCFBP13515_02150 | Not Available | Negative | 453903 - 455519 | 59824.0 |
| rna polymerase sigma factor rpoe | PviCFBP13515_02155 | Not Available | Positive | 456009 - 456590 | 22252.3 |
| rna polymerase subunit sigma | PviCFBP13515_02160 | Not Available | Positive | 456624 - 457217 | 20994.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
