Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-ib family hydrolase | PviCFBP13515_01960 | Not Available | Positive | 413849 - 414502 | 24272.1 |
| lysr family transcriptional regulator | PviCFBP13515_01965 | Not Available | Negative | 414723 - 415589 | 31778.0 |
| mandelate racemase | PviCFBP13515_01970 | Not Available | Positive | 415715 - 416884 | 43405.8 |
| c4-dicarboxylate transporter dcta | PviCFBP13515_01975 | Not Available | Positive | 416962 - 418278 | 46104.3 |
| hypothetical protein | PviCFBP13515_01980 | Not Available | Negative | 418347 - 418982 | 23456.8 |
| hypothetical protein | PviCFBP13515_01985 | Not Available | Positive | 419154 - 419423 | 9488.36 |
| arsr family transcriptional regulator | PviCFBP13515_01990 | Not Available | Negative | 419428 - 419727 | 11062.4 |
| nadh:flavin oxidoreductase/nadh oxidase | PviCFBP13515_01995 | Not Available | Positive | 419814 - 420905 | 39739.9 |
| type ii toxin-antitoxin system hicb family antitoxin | PviCFBP13515_02000 | Not Available | Negative | 421032 - 421442 | 14851.4 |
| addiction module toxin, hica family | PviCFBP13515_02005 | Not Available | Negative | 421548 - 421730 | 6889.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
