Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | PviCFBP13515_00795 | Not Available | Negative | 158862 - 159752 | 33087.2 |
| duf1127 domain-containing protein | PviCFBP13515_00800 | Not Available | Positive | 159812 - 160045 | 8916.92 |
| cytoplasmic protein | PviCFBP13515_00805 | Not Available | Positive | 160101 - 161306 | 45600.7 |
| 3-deoxy-7-phosphoheptulonate synthase class ii | PviCFBP13515_00810 | Not Available | Negative | 161314 - 162660 | 49990.3 |
| spermidine synthase | PviCFBP13515_00815 | Not Available | Positive | 162822 - 163583 | 28350.9 |
| atp-dependent rna helicase | PviCFBP13515_00820 | Not Available | Positive | 164024 - 165694 | 60664.6 |
| dioxygenase | PviCFBP13515_00825 | Not Available | Negative | 165772 - 166539 | 27939.4 |
| thiopurine s-methyltransferase | PviCFBP13515_00830 | Not Available | Positive | 166641 - 167312 | 25366.2 |
| amidotransferase | PviCFBP13515_00835 | Not Available | Negative | 167680 - 168408 | 27186.6 |
| rhodanese-like domain-containing protein | PviCFBP13515_00840 | Not Available | Positive | 169090 - 169464 | 13546.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
