Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycik family oxidoreductase | PviCFBP13515_00645 | Not Available | Negative | 127653 - 128393 | 26361.4 |
| n-acetylmuramic acid 6-phosphate phosphatase mupp | PviCFBP13515_00650 | Not Available | Negative | 128421 - 129092 | 24565.6 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | PviCFBP13515_00655 | Not Available | Negative | 129096 - 129794 | 25951.2 |
| trz/atz family hydrolase | PviCFBP13515_00660 | Not Available | Negative | 129877 - 131229 | 48853.6 |
| s-methyl-5-thioribose-1-phosphate isomerase | PviCFBP13515_00665 | Not Available | Positive | 131348 - 132424 | 38877.6 |
| dna gyrase subunit a | PviCFBP13515_00670 | Not Available | Positive | 132728 - 135514 | 102562.0 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | PviCFBP13515_00675 | Not Available | Positive | 135725 - 136810 | 39751.4 |
| prephenate dehydratase | PviCFBP13515_00680 | Not Available | Positive | 136810 - 137904 | 40284.4 |
| prephenate dehydrogenase/arogenate dehydrogenase family protein | PviCFBP13515_00685 | Not Available | Positive | 137980 - 139584 | 56341.9 |
| (d)cmp kinase | PviCFBP13515_00690 | Not Available | Positive | 139581 - 140270 | 24668.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
