Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobyrinate a,c-diamide synthase | PviCFBP13515_00495 | Not Available | Positive | 97979 - 99274 | 46286.7 |
| 5,6-dimethylbenzimidazole synthase | PviCFBP13515_00500 | Not Available | Positive | 99271 - 99921 | 24141.4 |
| cobalamin biosynthesis protein | PviCFBP13515_00505 | Not Available | Positive | 99918 - 100826 | 32903.7 |
| threonine-phosphate decarboxylase | PviCFBP13515_00510 | Not Available | Positive | 100819 - 101820 | 37084.4 |
| cobyric acid synthase | PviCFBP13515_00515 | Not Available | Positive | 101820 - 103280 | 52396.1 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | PviCFBP13515_00520 | Not Available | Positive | 103282 - 103803 | 18848.1 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | PviCFBP13515_00525 | Not Available | Positive | 103800 - 104852 | 36210.8 |
| histidine phosphatase family protein | PviCFBP13515_00530 | Not Available | Positive | 104849 - 105421 | 20814.9 |
| adenosylcobinamide-gdp ribazoletransferase | PviCFBP13515_00535 | Not Available | Positive | 105423 - 106154 | 25708.7 |
| mfs transporter | PviCFBP13515_00540 | Not Available | Positive | 106260 - 107468 | 42363.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
